computational-biology

43 entries in Computational Biology & Chemistry.

• BLASTSeed-and-extend word matchescanoncomputational-biology
• FASTA searchK-tuple hotspot diagonalsstandardcomputational-biology
• Progressive alignmentGuide-tree orderingstandardcomputational-biology
• ClustalNeighbor-joining guide treestandardcomputational-biology
• MUSCLEIterative refinementspecialistcomputational-biology
• MAFFTFFT-based homologyspecialistcomputational-biology
• Profile HMM alignmentViterbi decodingstandardcomputational-biology
• HMMERForward-score filteringspecialistcomputational-biology
• Neighbor joiningstandalonestandardcomputational-biology
• UPGMAAverage-linkage clusteringstandardcomputational-biology
• Maximum parsimonyFitch scoringstandardcomputational-biology
• Sankoff algorithmWeighted parsimonyspecialistcomputational-biology
• Maximum likelihood phylogenyFelsenstein pruningstandardcomputational-biology
• Bayesian phylogeneticsMCMC tree samplingspecialistcomputational-biology
• de Bruijn graph assemblyK-mer overlapcanonfull lesson ▸computational-biology
• Overlap-layout-consensusstandalonestandardcomputational-biology
• String graph assemblyTransitive edge reductionspecialistcomputational-biology
• Eulerian path assemblystandalonestandardcomputational-biology
• Burrows-Wheeler read alignmentFM-index backward searchcanoncomputational-biology
• Bowtie alignmentBacktracking on FM-indexstandardcomputational-biology
• BWA-MEMMaximal exact match seedingstandardcomputational-biology
• Minimap2Minimizer chainingstandardcomputational-biology
• Minimizer sketchingWindowed minimum k-mersstandardcomputational-biology
• MinHash genome distanceMash sketchingspecialistcomputational-biology
• Nussinov algorithmstandalonestandardcomputational-biology
• Zuker algorithmFree-energy minimizationstandardcomputational-biology
• CYK for RNAStochastic context-free grammarsspecialistcomputational-biology
• Gene findingGHMM gene modelsspecialistcomputational-biology
• Gibbs motif samplerstandalonespecialistcomputational-biology
• Expectation maximization motifMEME modelspecialistcomputational-biology
• Protein structure predictionFragment assemblyspecialistcomputational-biology
• Protein threadingFold-recognition scoringspecialistcomputational-biology
• Molecular dynamicsVelocity Verlet integrationstandardcomputational-biology
• Docking searchShape-complementarity scoringspecialistcomputational-biology
• Sequence logo scoringPosition weight matrixstandardcomputational-biology
• Ukkonen approximate matchingstandalonespecialistcomputational-biology
• Wavefront alignmentDiagonal wavefront expansionspecialistcomputational-biology
• Variant callingHaplotype reassemblyspecialistcomputational-biology
• Pileup variant callingBayesian genotype likelihoodsspecialistcomputational-biology
• AlphaFold-style foldingEvoformer attention on MSAsstandardcomputational-biology
• Suffix-array read overlapstandalonespecialistcomputational-biology
• Colored de Bruijn graphstandalonespecialistcomputational-biology
• Pan-genome graph alignmentstandalonespecialistcomputational-biology